A B C D E F G H I J K L M N O P Q R S T U V W X

S

satisfiesResource(RDG) - Method in interface info.sswap.api.model.RQG
Checks whether this RQG matches the given RDG
satisfiesResource(RDG) - Method in class info.sswap.impl.empire.model.RQGImpl
 
selectTemplateSubject(Collection<SSWAPSubject>, SSWAPObject) - Method in class info.sswap.impl.empire.model.RRGImpl
 
sendError(HttpServletRequest, HttpServletResponse, String, int) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Return an error message.
sendError(HttpServletResponse, int, String) - Method in class info.sswap.api.servlet.CacheHandler
 
sendError(HttpServletResponse, int, String) - Method in class info.sswap.api.servlet.ContentCacheHandler
 
serialize(Input) - Method in interface info.sswap.api.input.io.InputSerializer
Serializes the given input to an object.
serialize(Input) - Method in class info.sswap.api.input.io.JenaSerializer
 
serialize(Input, Model) - Method in class info.sswap.api.input.io.JenaSerializer
 
serialize(Input, Resource) - Method in class info.sswap.api.input.io.JenaSerializer
 
serialize(Input) - Method in class info.sswap.api.input.io.JSONSerializer
 
serialize(InputValue) - Method in class info.sswap.api.input.io.JSONSerializer
 
serialize(Input) - Method in class info.sswap.api.input.io.StringSerializer
 
serialize(Writer, Input) - Method in class info.sswap.api.input.io.StringSerializer
 
serialize(OutputStream) - Method in interface info.sswap.api.model.SSWAPModel
Serializes the contents of this object to the specified stream as RDF/XML.
serialize(OutputStream, RDFRepresentation, boolean) - Method in interface info.sswap.api.model.SSWAPModel
Serializes the contents of this object to the specified stream.
serialize(OutputStream) - Method in class info.sswap.impl.empire.model.ModelImpl
 
serialize(OutputStream, RDFRepresentation, boolean) - Method in class info.sswap.impl.empire.model.ModelImpl
 
serialize(OutputStream, RDFRepresentation, boolean) - Method in class info.sswap.impl.empire.model.ProtocolImpl
 
serialize(OutputStream) - Method in interface info.sswap.impl.empire.model.SourceModel
Serializes the contents of this object to the specified stream as RDF/XML.
serialize(OutputStream, RDFRepresentation, boolean) - Method in interface info.sswap.impl.empire.model.SourceModel
Serializes the contents of this object to the specified stream.
serialize(OutputStream) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
serialize(OutputStream, RDFRepresentation, boolean) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
serialize(OutputStream, RDFRepresentation, boolean) - Method in class info.sswap.impl.empire.model.TypeImpl
 
serialize(InputStream) - Method in interface info.sswap.ontologies.data.api.Serializer
Method acts as a filter: it is passed an input stream and should return a input stream of serialized data suitable for immediate reading.
serialize(InputStream) - Method in class info.sswap.ontologies.data.impl.AbstractData
Default implementation just passes inputStream untouched.
serialize(InputStream) - Method in class info.sswap.ontologies.data.impl.AttachmentImpl
Uses the default base64 serializer if and only if there is a data:hasSerializer property with the default value (Base64Serializer.uri).
serialize(InputStream) - Method in class info.sswap.ontologies.data.impl.Base64Serializer
 
serializeModel(Model, OutputStream, RDFRepresentation, boolean) - Static method in class info.sswap.impl.empire.model.ModelUtils
Serializes a Jena model into the output stream in the specified RDF representation.
Serializer - Interface in info.sswap.ontologies.data.api
Interface to web resources that serialize data.
serializeResponse(HttpServletRequest, HttpServletResponse, SSWAPModel) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Serialize the model back to the HTTP response.
SerializerException - Exception in info.sswap.ontologies.data.api
Serializer-specific exceptions.
SerializerException() - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception
SerializerException(String) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified message
SerializerException(Throwable) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified underlying cause
SerializerException(String, Throwable) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified message and the underlying cause
serialVersionUID - Static variable in exception info.sswap.api.model.DataAccessException
A serial version id for a serializable class.
serialVersionUID - Static variable in exception info.sswap.api.model.ValidationException
A serial version id for a serializable class.
serialVersionUID - Static variable in class info.sswap.api.servlet.AbstractSSWAPServlet
Default
serialVersionUID - Static variable in exception info.sswap.api.servlet.ClientException
Default
serialVersionUID - Static variable in class info.sswap.api.servlet.ContentCache.Entry
 
serialVersionUID - Static variable in class info.sswap.api.servlet.LegacyServiceWrapperServlet
 
serialVersionUID - Static variable in exception info.sswap.api.servlet.RequestEntityTooLargeException
Default
serialVersionUID - Static variable in class info.sswap.api.servlet.RRGCache.Entry
Generated serial version identifier for a serializable class
serialVersionUID - Static variable in class info.sswap.api.servlet.SimpleSSWAPServlet
 
serialVersionUID - Static variable in exception info.sswap.impl.empire.io.ByteLimitExceededException
Serial version identifier for ByteLimitExceededException
serialVersionUID - Static variable in exception info.sswap.ontologies.data.api.AccessorException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.data.api.DataException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.data.api.ParserException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.data.api.SerializerException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.data.api.ValidatorException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.exec.api.ArgumentTooLongException
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.exec.api.ExecException
Default
serialVersionUID - Static variable in class info.sswap.ontologies.exec.api.ExecServlet
Default
serialVersionUID - Static variable in exception info.sswap.ontologies.exec.api.TooManyArgumentsException
Default
serialVersionUID - Static variable in class info.sswap.ontologies.exec.impl.ExecImpl
 
servlet - Variable in class info.sswap.api.servlet.MapsTo
 
set(int, SSWAPElement) - Method in class info.sswap.impl.empire.model.ListImpl
 
setAboutURI(URI) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the URI pointing to a human-readable description of this provider.
setAboutURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to a human-readable description of this resource.
setAboutURI(URI) - Method in class info.sswap.impl.empire.model.ProviderImpl
Sets the URI pointing to a human-readable description of this provider.
setAboutURI(URI) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setAsInaccessible(String) - Method in class info.sswap.impl.empire.io.ModelCache
 
setAutoDetectChanges(boolean) - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
setAutomaticTermRetrieval(boolean) - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
setClientSideTranslation(boolean) - Method in class info.sswap.impl.empire.model.RIGImpl
 
setClosureEnabled(SSWAPDocument, boolean) - Method in interface info.sswap.api.spi.APIProvider
 
setClosureEnabled(SSWAPDocument, boolean) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets flag whether this source model will perform the closure to deliver terms to its reasoning service, or whether the reasoning service should solely rely on terms in this source model.
setClosureEnabled(SSWAPDocument, boolean) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setClosureEnabled(boolean) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets flag whether this source model will perform the closure to deliver terms to its reasoning service, or whether the reasoning service should solely rely on terms in this source model.
setClosureEnabled(boolean) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setClosureModel(Model) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setConnectTimeout(int) - Method in class info.sswap.impl.empire.io.ClosureBuilder
Sets the connect timeout for a single HTTP connection
setContent(byte[]) - Method in class info.sswap.api.servlet.ContentCache.Entry
 
setContentType(String) - Method in class info.sswap.api.servlet.ContentCache.Entry
 
setCrossDocumentTermRetrieval(boolean) - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
setData() - Method in interface info.sswap.ontologies.data.api.Directory
Build the Collection to be returned by Directory.getData().
setData() - Method in class info.sswap.ontologies.data.impl.DirectoryImpl
 
setDefaultParameterValues(IndividualImpl) - Method in class info.sswap.impl.empire.model.IndividualImpl
Sets the default parameter values for this individual based on the information from the individual in an RDG.
setDefaultParameterValues(IndividualImpl) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setDereferenced(boolean) - Method in class info.sswap.impl.empire.model.ModelImpl
Sets the dereference flag.
setDescription(String) - Method in class info.sswap.api.input.impl.AbstractInput
 
setDescription(String) - Method in interface info.sswap.api.input.Input
Sets the description of this input.
setDocumentURI(T, Class<T>) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
setEntityManager(EntityManager) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets the Empire Entity manager that manages objects created based on the information from that Jena model.
setEntityManager(EntityManager) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setEnvironment(Map<String, String>) - Method in interface info.sswap.ontologies.exec.api.Exec
Set the process' execution environment.
setEnvironment(Map<String, String>) - Method in class info.sswap.ontologies.exec.impl.ExecImpl
 
setError(String, String) - Method in class info.sswap.api.servlet.RRGCache
Sets an error message, indicating that computation of the particular RRG has failed.
setErrorHandler(RDFErrorHandler) - Method in class info.sswap.impl.empire.model.RDFCSVWriter
Deprecated.  
setErrorHandler(RDFErrorHandler) - Method in class info.sswap.impl.empire.model.RDFTSVWriter
 
setErrorMessage(String) - Method in class info.sswap.api.servlet.RRGCache.Entry
 
setExplanationSyntax(String) - Method in interface info.sswap.api.spi.APIProvider
 
setExplanationSyntax(String) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets the syntax in which explanations will be provided, if reasoning service finds an inconsistent ontology.
setExplanationSyntax(String) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setFilter(URI, URI, URI) - Method in class info.sswap.ontologies.data.impl.AttachmentImpl
Set the parser or serializer depending on the datatype of the data or the ontology predicate value.
setGraph(SSWAPGraph) - Method in interface info.sswap.api.model.SSWAPResource
Sets the SSWAPGraph for this resource.
setGraph(SSWAPGraph) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setGraphs(Collection<SSWAPGraph>) - Method in interface info.sswap.api.model.SSWAPResource
Sets the SSWAPGraphs for this resource.
setGraphs(Collection<SSWAPGraph>) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setHasMappingEmpireList(List<SubjectImpl>) - Method in class info.sswap.impl.empire.model.GraphImpl
Sets the list of subjects to which this graph is connected by sswap:hasMapping property.
setIcon(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI of the icon for this resource
setIcon(URI) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setIndividual(SSWAPIndividual) - Method in class info.sswap.impl.empire.model.PropertyImpl
 
setInputURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to a human-readable user interface for this resource.
setInputURI(URI) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setInterval(int) - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Set the delay interval between directory scans.
setInterval(int) - Method in class info.sswap.ontologies.exec.impl.ExecImpl
 
setInterval(int) - Method in class info.sswap.ontologies.exec.impl.HotboxPollerImpl
 
setLabel(String) - Method in class info.sswap.api.input.impl.AbstractInput
 
setLabel(String) - Method in interface info.sswap.api.input.Input
Sets the label for this input.
setLabelDescription(Input, ATermAppl) - Method in class info.sswap.api.input.io.SSWAPDeserializer
 
setMapsToEmpireList(List<ObjectImpl>) - Method in class info.sswap.impl.empire.model.SubjectImpl
Sets a list of SSWAPObject implementations that will all be connected to this SSWAPSubject by sswap:mapsTo predicate.
setMatchingGraphs(Collection<SSWAPGraph>) - Method in class info.sswap.impl.empire.model.ProtocolImpl
 
setMatchingGraphs(Collection<SSWAPGraph>) - Method in class info.sswap.impl.empire.model.RIGImpl
 
setMaxBytes(long) - Method in class info.sswap.impl.empire.io.ClosureBuilderFactory
Sets the current byte limit.
setMaxCardinality(int) - Method in class info.sswap.api.input.impl.PropertyInputImpl
setMaxCardinality(int) - Method in interface info.sswap.api.input.PropertyInput
 
setMaxClosureBytes(SSWAPModel, long) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific byte limit to retrieve the closure
setMaxClosureBytes(SSWAPModel, long) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific byte limit to retrieve the closure
setMaxClosureBytes(SSWAPModel, long) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setMaxClosureBytes(long) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets a model-specific byte limit for retrieving closure for this source model, or restores the system-wide limit.
setMaxClosureBytes(long) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setMaxClosureThreads(SSWAPModel, int) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific limit on the number of threads used to retrieve the closure
setMaxClosureThreads(SSWAPModel, int) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific limit on the number of threads used to retrieve the closure
setMaxClosureThreads(SSWAPModel, int) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setMaxClosureThreads(int) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets a model-specific concurrent thread limit for retrieving closure for this source model, or restores the system-wide limit.
setMaxClosureThreads(int) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setMaxClosureTime(SSWAPModel, long) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific time limit to retrieve the closure
setMaxClosureTime(SSWAPModel, long) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific time limit to retrieve the closure
setMaxClosureTime(SSWAPModel, long) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setMaxClosureTime(long) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets a model-specific time limit for retrieving closure for this source model, or restores the system-wide limit.
setMaxClosureTime(long) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setMaxThreads(int) - Method in class info.sswap.impl.empire.io.ClosureBuilderFactory
Sets the number of concurrent threads that will build the closure
setMaxTime(long) - Method in class info.sswap.impl.empire.io.ClosureBuilderFactory
Sets the new time limit (in milliseconds)
setMetadata(URI) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the URI pointing to the machine-readable metadata for this provider.
setMetadata(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to the machine-readable metadata for this resource.
setMetadata(URI) - Method in class info.sswap.impl.empire.model.ProviderImpl
Sets the URI pointing to the machine-readable metadata for this provider.
setMetadata(URI) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setMinCardinality(int) - Method in class info.sswap.api.input.impl.PropertyInputImpl
setMinCardinality(int) - Method in interface info.sswap.api.input.PropertyInput
 
setModel(String, Model) - Method in class info.sswap.impl.empire.io.ModelCache
Stores a copy of a model in the cache.
setModel(String, Model, boolean) - Method in class info.sswap.impl.empire.io.ModelCache
 
setModel(Model) - Method in interface info.sswap.impl.empire.model.SourceModel
Replaces the underlying Jena model with another one.
setModel(Model) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setModelCache(ModelCache) - Method in class info.sswap.impl.empire.io.ClosureBuilderFactory
Sets a new model cache that will be used by ClosureBuilders
setMutable(boolean) - Method in class info.sswap.impl.empire.model.RRGImpl
Sets whether this object is mutable.
setName(String) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the name of the provider.
setName(String) - Method in interface info.sswap.api.model.SSWAPResource
Sets the name of the resource.
setName(String) - Method in class info.sswap.impl.empire.model.ProviderImpl
Sets the name of the provider.
setName(String) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setNamespaces(RIG, Map<String, String[]>) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Parse the GET query string parameter map for prefixes (namespace assignments) and set the namespaces in the rig's NsPrefixMap.
setNegativeTimeToLive(long) - Method in class info.sswap.impl.empire.io.ModelCache
 
setNsPrefix(String, URI) - Method in interface info.sswap.api.model.SSWAPModel
Sets a namespace prefix that will be used in serialization of this model.
setNsPrefix(String, URI) - Method in class info.sswap.impl.empire.model.ModelImpl
 
setNsPrefix(String, URI) - Method in class info.sswap.impl.empire.model.RRGImpl
 
setNsPrefix(String, URI) - Method in interface info.sswap.impl.empire.model.SourceModel
Sets a namespace prefix that will be used in serialization of this model.
setNsPrefix(String, URI) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setObject(SSWAPObject) - Method in interface info.sswap.api.model.SSWAPSubject
Sets a new SSWAPObject for this SSWAPSubject.
setObject(SSWAPObject) - Method in class info.sswap.impl.empire.model.SubjectImpl
 
setObject(SSWAPObject) - Method in class info.sswap.impl.empire.model.TranslatedSubjectImpl
 
setObjects(Collection<SSWAPObject>) - Method in interface info.sswap.api.model.SSWAPSubject
Maps this subject onto the provided collection
setObjects(Collection<SSWAPObject>) - Method in class info.sswap.impl.empire.model.SubjectImpl
 
setObjects(Collection<SSWAPObject>) - Method in class info.sswap.impl.empire.model.TranslatedSubjectImpl
 
setOneLineDescription(String) - Method in interface info.sswap.api.model.SSWAPProvider
Sets one line description of the provider.
setOneLineDescription(String) - Method in interface info.sswap.api.model.SSWAPResource
Sets one line description of the resource.
setOneLineDescription(String) - Method in class info.sswap.impl.empire.model.ProviderImpl
Sets one line description of the provider.
setOneLineDescription(String) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setOperatesOnEmpireList(List<GraphImpl>) - Method in class info.sswap.impl.empire.model.ResourceImpl
Sets a list of SSWAPGraph implementations that will all be connected to this SSWAPResource by sswap:operatesOn predicate.
setOriginalResource(ResourceImpl) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setOriginalSubject(SSWAPSubject) - Method in class info.sswap.impl.empire.model.TranslatedSubjectImpl
Sets the original (non-translated) subject.
setOutputURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
 
setOutputURI(URI) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setOwlDlRequired(boolean) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
setProperty(String, String) - Method in class info.sswap.api.model.Config
Sets the value of the specified property.
setProperty(SSWAPPredicate, SSWAPIndividual) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the individual.
setProperty(SSWAPPredicate, String) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the specified value.
setProperty(SSWAPPredicate, String, URI) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the specified value and datatype URI.
setProperty(SSWAPPredicate, SSWAPLiteral) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the literal object.
setProperty(SSWAPProperty) - Method in class info.sswap.impl.empire.model.IndividualImpl
 
setProperty(SSWAPPredicate, SSWAPIndividual) - Method in class info.sswap.impl.empire.model.IndividualImpl
 
setProperty(SSWAPPredicate, String) - Method in class info.sswap.impl.empire.model.IndividualImpl
 
setProperty(SSWAPPredicate, String, URI) - Method in class info.sswap.impl.empire.model.IndividualImpl
 
setProperty(SSWAPPredicate, SSWAPLiteral) - Method in class info.sswap.impl.empire.model.IndividualImpl
 
setProperty(String, Object) - Method in class info.sswap.impl.empire.model.RDFCSVWriter
Deprecated. No properties are currently supported.
setProperty(String, Object) - Method in class info.sswap.impl.empire.model.RDFTSVWriter
No properties are currently supported.
setPropertyInput(PropertyInput) - Method in class info.sswap.api.input.impl.AbstractInput
 
setPropertyInput(PropertyInput) - Method in interface info.sswap.api.input.Input
 
setProvidedBy(ProviderImpl) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setProvider(SSWAPProvider) - Method in interface info.sswap.api.model.SSWAPResource
Sets the provider for this resource.
setProvider(SSWAPProvider) - Method in class info.sswap.impl.empire.model.ResourceImpl
 
setProvidesResource(Collection<SSWAPResource>) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the information about all the resources provided by this provider.
setProvidesResource(Collection<SSWAPResource>) - Method in class info.sswap.impl.empire.model.ProviderImpl
Sets the information about all the resources provided by this provider.
setProvidesResourceList(List<ResourceImpl>) - Method in class info.sswap.impl.empire.model.ProviderImpl
Empire-generated method for setting a list of implementations of SSWAPResource that will be connected to this PDG by sswap:providesResource predicate.
setRange(Input) - Method in class info.sswap.api.input.impl.PropertyInputImpl
setRange(Input) - Method in interface info.sswap.api.input.PropertyInput
 
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.DatatypeImpl
Sets the RDF identifier of this type.
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.ListImpl
This method is required by the interface, but since lists cannot have their own identifiers, a call to this will result in UnsupportedOperationException
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.Literal
Sets the RDF identifier (method required by the interface).
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.NonEmpireIndividual
A setter for the RDF Identifier of this individual.
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.PredicateImpl
Sets the RDF identifier of this type.
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.PropertyImpl
 
setRdfId(SupportsRdfId.RdfKey) - Method in class info.sswap.impl.empire.model.TypeImpl
Sets the RDF identifier of this type.
setRDG(RDG) - Method in class info.sswap.impl.empire.model.RIGImpl
 
setReadTimeout(int) - Method in class info.sswap.impl.empire.io.ClosureBuilder
Sets the read timeout for a single HTTP connection
setResource(SSWAPResource) - Method in class info.sswap.impl.empire.model.GraphImpl
 
setResourceValidationEnabled(boolean) - Method in class info.sswap.impl.empire.model.RQGImpl
 
setRIG(RIG) - Method in class info.sswap.api.servlet.MapsTo
The RIG for this mapping; this should be set at the first opportunity (e.g. in initializeRequest.
setRrgSerialization(String) - Method in class info.sswap.api.servlet.RRGCache.Entry
 
setServlet(SimpleSSWAPServlet) - Method in class info.sswap.api.servlet.MapsTo
 
setSourceModel(List<T>, SourceModel) - Static method in class info.sswap.impl.empire.model.EmpireGeneratedNodeImpl
Convenience method for setting the same source model to all elements in a list
setSourceModel(SourceModel) - Method in class info.sswap.impl.empire.model.IndividualImpl
Sets the source model for this individual.
setSourceModel(SourceModel) - Method in class info.sswap.impl.empire.model.ModelImpl
Sets the source model for this object (i.e., the object that actually holds the Jena model with RDF data).
setStatus(String) - Method in class info.sswap.api.servlet.RRGCache.Entry
 
setStatus(String, String) - Method in class info.sswap.api.servlet.RRGCache
 
setSubject(SSWAPSubject) - Method in interface info.sswap.api.model.SSWAPGraph
Sets the subject of the graph.
setSubject(SSWAPSubject) - Method in class info.sswap.impl.empire.model.GraphImpl
 
setSubjects(Collection<SSWAPSubject>) - Method in interface info.sswap.api.model.SSWAPGraph
Sets the subjects of the graph.
setSubjects(Collection<SSWAPSubject>) - Method in class info.sswap.impl.empire.model.GraphImpl
 
setSuggestedPollingInterval(int) - Method in class info.sswap.api.servlet.RRGCache.Entry
 
setSuggestedPollingInterval(String, int) - Method in class info.sswap.api.servlet.RRGCache
Sets suggested polling interval for a (potentially future) RRG identified by a token.
setTimeout(int) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Set servlet timeout value, in milliseconds.
setTimeToLive(long) - Method in interface info.sswap.api.model.Cache
Sets the time-to-live for entries in this cache; that is, the time after which an entry in this cache is considered stale, and will be retrieved again from its source.
setTimeToLive(long) - Method in class info.sswap.impl.empire.io.ModelCache
Sets the time-to-live (in milliseconds) for entries in this cache.
setURI(URI) - Method in class info.sswap.impl.empire.model.ModelImpl
Sets the URI of this object.
setURI(URI) - Method in class info.sswap.impl.empire.model.PropertyImpl
 
setUsernamePasswd(String, String) - Method in class info.sswap.ontologies.data.impl.HTTPBasicAuthImpl
Set the username and password; replaces username and password as set with the constructor.
setValue(InputValue) - Method in class info.sswap.api.input.impl.AbstractInput
Sets the value for this input object.
setValue(InputValue) - Method in interface info.sswap.api.input.Input
Sets the value for this input object.
setValue(SSWAPElement) - Method in class info.sswap.impl.empire.model.PropertyImpl
 
setValue(URI, URI, boolean) - Method in class info.sswap.ontologies.data.impl.AbstractData
Sets th
setValueIndex(int) - Method in class info.sswap.api.input.impl.UnionInputImpl
 
setValueIndex(int) - Method in interface info.sswap.api.input.UnionInput
Returns the index of the input where value of this union should be read or -1 if no value is provided for this union.
setValueType(int, URI) - Method in class info.sswap.api.input.impl.UnionInputImpl
 
setValueType(int, URI) - Method in interface info.sswap.api.input.UnionInput
 
setValueTypes(JSONObject, UnionInput) - Method in class info.sswap.api.input.io.JSONDeserializer
 
setValueValidation(SSWAPDocument, boolean) - Method in interface info.sswap.api.spi.APIProvider
 
setValueValidation(SSWAPDocument, boolean) - Static method in class info.sswap.api.spi.ExtensionAPI
Turns on/off value validation performed when setting values of properties for SSWAPIndividual.
setValueValidation(SSWAPDocument, boolean) - Method in class info.sswap.impl.empire.APIProviderImpl
 
setValueValidationEnabled(boolean) - Method in interface info.sswap.impl.empire.model.SourceModel
Turns on or off validation of values for properties in this model (i.e., values set via SSWAPIndividual.addProperty() and SSWAPIndividual.setProperty() methods)
setValueValidationEnabled(boolean) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
shouldBeEnqueued(Model, RDFNode, boolean) - Method in class info.sswap.impl.empire.io.ClosureBuilder
Checks whether the URI of an RDFNode from the Jena model should be enqueued for retrieval.
shouldRemainAnon(Model, Resource) - Static method in class info.sswap.impl.empire.model.ModelUtils
Checks whether a resource should remain anonymous.
shutdown() - Method in class info.sswap.api.servlet.ContentCache
 
shutdown() - Method in class info.sswap.api.servlet.RRGCache
 
SimpleSSWAPServlet - Class in info.sswap.api.servlet
A servlet wrapper that works in concert with MapsTo for the mapping of subjects to objects.
SimpleSSWAPServlet() - Constructor for class info.sswap.api.servlet.SimpleSSWAPServlet
 
size() - Method in class info.sswap.impl.empire.model.ListImpl
 
sleepMilliSeconds - Variable in class info.sswap.ontologies.exec.impl.HotboxPollerImpl
 
sleepSecondsSystemProperty - Variable in class info.sswap.ontologies.exec.impl.HotboxPollerImpl
 
sortedRows - Variable in class info.sswap.impl.empire.model.RDFCSVWriter.DataStructure
Deprecated.  
sourceModel - Variable in class info.sswap.impl.empire.model.ModelImpl
The reference to the source model; that is, the object that manages the Jena model containing the RDF data for this object.
SourceModel - Interface in info.sswap.impl.empire.model
Common interface for all SSWAP Models that have their own underlying Jena model.
SourceModelImpl - Class in info.sswap.impl.empire.model
Implementation of SSWAP model that is directly backed by a Jena model.
SourceModelImpl() - Constructor for class info.sswap.impl.empire.model.SourceModelImpl
Initializes an empty, undereferenced SourceModel
sourceModels - Variable in class info.sswap.impl.empire.model.ReasoningServiceImpl
The source models for which this reasoning service operates.
SPARQL_NS_PREFIXES - Static variable in class info.sswap.impl.empire.Namespaces
Contains all the namespace prefixes defined in this class as a SPARQL fragment that can be used in a query.
SSWAP - Class in info.sswap.api.model
Main factory for the creation of SSWAP objects (most elements in the API are just interfaces).
SSWAP() - Constructor for class info.sswap.api.model.SSWAP
 
SSWAP - Static variable in class info.sswap.impl.empire.Vocabulary
 
SSWAP_AGAVE_NS - Static variable in class info.sswap.impl.empire.Namespaces
 
SSWAP_API_URI_DEFAULT_VALUE - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
SSWAP_API_URI_SYSTEM_PROPERTY - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
SSWAP_ASYNC_NS - Static variable in class info.sswap.impl.empire.Namespaces
The SSWAP Async namespace
SSWAP_DATA_NS - Static variable in class info.sswap.impl.empire.Namespaces
 
SSWAP_EXEC_NS - Static variable in class info.sswap.impl.empire.Namespaces
 
SSWAP_GRAPH - Static variable in class info.sswap.impl.empire.Vocabulary
Jena resource for sswap:Graph
SSWAP_HTTP_EXCEPTION_HEADER - Static variable in class info.sswap.impl.empire.Vocabulary
Non-standard HTTP Header to return error message
SSWAP_HTTP_EXCEPTION_HEADER - Static variable in class info.sswap.impl.http.AbstractHTTPResponse
 
SSWAP_MIME_NS - Static variable in class info.sswap.impl.empire.Namespaces
 
SSWAP_NODE_TYPES - Static variable in class info.sswap.impl.empire.model.ModelUtils
Types of SSWAPNodes (resources that require special handling in SSWAP Protocol)
SSWAP_NS - Static variable in class info.sswap.impl.empire.Namespaces
 
SSWAP_OBJECT - Static variable in class info.sswap.impl.empire.Vocabulary
Jena resource for sswap:Object
SSWAP_ONTOLOGY_URI - Static variable in class info.sswap.impl.empire.model.SourceModelImpl
The URI used for ontology imports
SSWAP_ONTOLOGY_URI - Static variable in class info.sswap.impl.empire.Vocabulary
The URI of SSWAP Ontology
SSWAP_OUTPUT_URI_HEADER - Static variable in class info.sswap.impl.empire.Vocabulary
Non-standard HTTP header to return information about sswap:outputURI (e.g., to provide this information to clients that do not have capability to process RDF/XML)
SSWAP_PROTOCOL_COMMENTS_STYLESHEET - Static variable in class info.sswap.impl.empire.model.ModelUtils
The file name of the XSL StyleSheet that adds comments to an RDF/XML serialization of a SSWAP protocol graph
SSWAP_PROVIDER - Static variable in class info.sswap.impl.empire.Vocabulary
Jena resource for sswap:Provider
SSWAP_RESOURCE - Static variable in class info.sswap.impl.empire.Vocabulary
Jena resource for sswap:Resource
SSWAP_SUBJECT - Static variable in class info.sswap.impl.empire.Vocabulary
Jena resource for sswap:Subject
SSWAPDatatype - Interface in info.sswap.api.model
Represents a datatype definition.
SSWAPDatatype.XSD - Interface in info.sswap.api.model
XSD URIs based on the Jena vocabulary.
SSWAPDeserializer - Class in info.sswap.api.input.io
Creates Input objects from a given SSWAPType using several heuristics.
SSWAPDeserializer() - Constructor for class info.sswap.api.input.io.SSWAPDeserializer
 
SSWAPDeserializer.VisitDepth - Enum in info.sswap.api.input.io
 
SSWAPDeserializer.VisitDepth() - Constructor for enum info.sswap.api.input.io.SSWAPDeserializer.VisitDepth
 
SSWAPDeserializer.VisitedTerms - Class in info.sswap.api.input.io
 
SSWAPDeserializer.VisitedTerms() - Constructor for class info.sswap.api.input.io.SSWAPDeserializer.VisitedTerms
 
SSWAPDocument - Interface in info.sswap.api.model
Represents a document in SSWAP that holds RDF content, such as may be hosted on the web (e.g., an RDG).
sswapDocument - Variable in class info.sswap.impl.http.AbstractHTTPResponse
 
sswapDocument - Variable in class info.sswap.ontologies.data.impl.AbstractData
 
SSWAPElement - Interface in info.sswap.api.model
Represents a basic element in a SSWAPDocument.
SSWAPGraph - Interface in info.sswap.api.model
A SSWAP Graph of a SSWAP Resource.
SSWAPIndividual - Interface in info.sswap.api.model
Represents an individual in SSWAP, which corresponds to an RDF resource (a URI or blank node).
sswapIndividual - Variable in class info.sswap.ontologies.data.impl.AbstractData
 
sswapIndividual - Variable in class info.sswap.ontologies.data.impl.DirectoryImpl
 
SSWAPIndividualDeserializer - Class in info.sswap.api.input.io
Creates Input objects from a given SSWAPIndividual.
SSWAPIndividualDeserializer() - Constructor for class info.sswap.api.input.io.SSWAPIndividualDeserializer
 
SSWAPIndividualDeserializer.PropertyInputVisitor - Class in info.sswap.api.input.io
 
SSWAPIndividualDeserializer.PropertyInputVisitor() - Constructor for class info.sswap.api.input.io.SSWAPIndividualDeserializer.PropertyInputVisitor
 
SSWAPList - Interface in info.sswap.api.model
A list of SSWAP elements.
SSWAPLiteral - Interface in info.sswap.api.model
Represents a literal value in SSWAP.
SSWAPMEET_NS - Static variable in class info.sswap.impl.empire.Namespaces
The SSWAP namespace http://sswapmeet.sswap.info/sswap/
SSWAPModel - Interface in info.sswap.api.model
The most abstract interface in the SSWAP Java API.
SSWAPNode - Interface in info.sswap.api.model
SSWAPNodes are special individuals in SSWAP protocol, and they are handled specially.
SSWAPObject - Interface in info.sswap.api.model
Object of SSWAP Graph.
sswapObjects - Variable in class info.sswap.api.servlet.MapsTo
 
SSWAPPredicate - Interface in info.sswap.api.model
Represents an RDF predicate in SSWAP.
SSWAPProperty - Interface in info.sswap.api.model
A SSWAPProperty is a specific instance of a SSWAPPredicate with an assigned value, associated with a SSWAPIndividual.
SSWAPProtocol - Interface in info.sswap.api.model
Common interface for all protocol graphs (RDG, RIG, RRG, etc.).
SSWAPProvider - Interface in info.sswap.api.model
Describes a provider in SSWAP.
SSWAPResource - Interface in info.sswap.api.model
Describes a resource (a service) in SSWAP.
SSWAPServletContextListener - Class in info.sswap.api.servlet
Responds to events like initialization/destruction of the servlet context.
SSWAPServletContextListener() - Constructor for class info.sswap.api.servlet.SSWAPServletContextListener
 
SSWAPSubject - Interface in info.sswap.api.model
Subject of a SSWAP Graph.
SSWAPType - Interface in info.sswap.api.model
Represents a type of an individual in SSWAP.
start() - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Start the hotbox directory polling.
start() - Method in class info.sswap.ontologies.exec.impl.ExecImpl
 
start() - Method in class info.sswap.ontologies.exec.impl.HotboxPollerImpl
 
startProcess(String[]) - Method in class info.sswap.ontologies.exec.impl.ExecImpl
Start the process.
startTime - Variable in class info.sswap.impl.empire.io.ClosureBuilder
 
status - Variable in class info.sswap.api.servlet.RRGCache.Entry
The status messge (if there is one; it may be null)
stop() - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Stop the hotbox directory polling.
stop() - Method in class info.sswap.ontologies.exec.impl.ExecImpl
 
stop() - Method in class info.sswap.ontologies.exec.impl.HotboxPollerImpl
 
storageNegativeTimes - Variable in class info.sswap.impl.empire.io.ModelCache
 
storagePositiveTimes - Variable in class info.sswap.impl.empire.io.ModelCache
Map of model URIs to the time when they were stored in this cache (to properly detect expired caches).
store(String, byte[], String) - Method in class info.sswap.api.servlet.ContentCache
Stores a computed RRG, indicating that the computation of an RRG was successful, and allowing its future retrieval by the client.
store(String, RRG) - Method in class info.sswap.api.servlet.RRGCache
Stores a computed RRG, indicating that the computation of an RRG was successful, and allowing its future retrieval by the client.
storeInMemory(String, Model, boolean) - Method in class info.sswap.impl.empire.io.ModelCache
 
storeOnDisk(String, Model) - Method in class info.sswap.impl.empire.io.ModelCache
 
storeProperties() - Method in class info.sswap.impl.empire.model.IndividualImpl
Creates statements about all non-ignored properties.
storeTypes() - Method in class info.sswap.impl.empire.model.IndividualImpl
 
StringSerializer - Class in info.sswap.api.input.io
Serializes the given Input object into a pretty string that spans multiple lines with indentation.
StringSerializer() - Constructor for class info.sswap.api.input.io.StringSerializer
 
stringToInputStream(String) - Method in class info.sswap.ontologies.data.impl.AbstractData
Convenience method to convert a string into an input stream.
SubjectImpl - Class in info.sswap.impl.empire.model
Implementation of SSWAPSubject.
SubjectImpl() - Constructor for class info.sswap.impl.empire.model.SubjectImpl
The default constructor
subjectMappings - Variable in class info.sswap.impl.empire.model.ProtocolImpl
Contains mappings from subjects in this protocol graph onto subjects in RDG.
subjects - Variable in class info.sswap.impl.empire.model.ObjectImpl
 
subList(int, int) - Method in class info.sswap.impl.empire.model.ListImpl
 
suggestedPollingInterval - Variable in class info.sswap.api.servlet.AbstractSSWAPServlet
Suggested polling interval read from web.xml (if defined) or a default value.
suggestedPollingInterval - Variable in class info.sswap.api.servlet.RRGCache.Entry
Suggested polling interval in milliseconds (this field only matters if the other fields are null; i.e., if polling makes sense; if the other fields are not null, the computation reached a terminal state).
supportsTranslation() - Method in class info.sswap.impl.empire.model.ProtocolImpl
Checks whether the particular implementation of Protocol Graph supports translation of terms (e.g., RIG)
supportsTranslation() - Method in class info.sswap.impl.empire.model.RIGImpl
 
supportsTranslation() - Method in class info.sswap.impl.empire.model.RRGImpl
 

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Copyright (c) 2011, iPlant Collaborative, University of Arizona, Cold Spring Harbor Laboratories, University of Texas at Austin.