A B C D E F G H I L M N O P Q R S T U V W X

S

satisfiesResource(RDG) - Method in interface info.sswap.api.model.RQG
Checks whether this RQG matches the given RDG
serialize(OutputStream) - Method in interface info.sswap.api.model.SSWAPModel
Serializes the contents of this object to the specified stream as RDF/XML.
serialize(OutputStream, RDFRepresentation, boolean) - Method in interface info.sswap.api.model.SSWAPModel
Serializes the contents of this object to the specified stream.
serialize(InputStream) - Method in interface info.sswap.ontologies.data.api.Serializer
Method acts as a filter: it is passed an input stream and should return a input stream of serialized data suitable for immediate reading.
Serializer - Interface in info.sswap.ontologies.data.api
Interface to web resources that serialize data.
SerializerException - Exception in info.sswap.ontologies.data.api
Serializer-specific exceptions.
SerializerException() - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception
SerializerException(String) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified message
SerializerException(Throwable) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified underlying cause
SerializerException(String, Throwable) - Constructor for exception info.sswap.ontologies.data.api.SerializerException
Creates a new exception with the specified message and the underlying cause
setAboutURI(URI) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the URI pointing to a human-readable description of this provider.
setAboutURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to a human-readable description of this resource.
setClosureEnabled(SSWAPDocument, boolean) - Method in interface info.sswap.api.spi.APIProvider
 
setClosureEnabled(SSWAPDocument, boolean) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets flag whether this source model will perform the closure to deliver terms to its reasoning service, or whether the reasoning service should solely rely on terms in this source model.
setData() - Method in interface info.sswap.ontologies.data.api.Directory
Build the Collection to be returned by Directory.getData().
setEnvironment(Map<String, String>) - Method in interface info.sswap.ontologies.exec.api.Exec
Set the process' execution environment.
setError(String, String) - Method in class info.sswap.api.servlet.RRGCache
Sets an error message, indicating that computation of the particular RRG has failed.
setExplanationSyntax(String) - Method in interface info.sswap.api.spi.APIProvider
 
setExplanationSyntax(String) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets the syntax in which explanations will be provided, if reasoning service finds an inconsistent ontology.
setGraph(SSWAPGraph) - Method in interface info.sswap.api.model.SSWAPResource
Sets the SSWAPGraph for this resource.
setGraphs(Collection<SSWAPGraph>) - Method in interface info.sswap.api.model.SSWAPResource
Sets the SSWAPGraphs for this resource.
setIcon(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI of the icon for this resource
setInputURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to a human-readable user interface for this resource.
setInterval(int) - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Set the delay interval between directory scans.
setMaxClosureBytes(SSWAPModel, long) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific byte limit to retrieve the closure
setMaxClosureBytes(SSWAPModel, long) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific byte limit to retrieve the closure
setMaxClosureThreads(SSWAPModel, int) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific limit on the number of threads used to retrieve the closure
setMaxClosureThreads(SSWAPModel, int) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific limit on the number of threads used to retrieve the closure
setMaxClosureTime(SSWAPModel, long) - Method in interface info.sswap.api.spi.APIProvider
Sets a model-specific time limit to retrieve the closure
setMaxClosureTime(SSWAPModel, long) - Static method in class info.sswap.api.spi.ExtensionAPI
Sets a model-specific time limit to retrieve the closure
setMetadata(URI) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the URI pointing to the machine-readable metadata for this provider.
setMetadata(URI) - Method in interface info.sswap.api.model.SSWAPResource
Sets the URI pointing to the machine-readable metadata for this resource.
setName(String) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the name of the provider.
setName(String) - Method in interface info.sswap.api.model.SSWAPResource
Sets the name of the resource.
setNsPrefix(String, URI) - Method in interface info.sswap.api.model.SSWAPModel
Sets a namespace prefix that will be used in serialization of this model.
setObject(SSWAPObject) - Method in interface info.sswap.api.model.SSWAPSubject
Sets a new SSWAPObject for this SSWAPSubject.
setObjects(Collection<SSWAPObject>) - Method in interface info.sswap.api.model.SSWAPSubject
Maps this subject onto the provided collection
setOneLineDescription(String) - Method in interface info.sswap.api.model.SSWAPProvider
Sets one line description of the provider.
setOneLineDescription(String) - Method in interface info.sswap.api.model.SSWAPResource
Sets one line description of the resource.
setOutputURI(URI) - Method in interface info.sswap.api.model.SSWAPResource
 
setProperty(String, String) - Method in class info.sswap.api.model.Config
Sets the value of the specified property.
setProperty(SSWAPPredicate, SSWAPIndividual) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the individual.
setProperty(SSWAPPredicate, String) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the specified value.
setProperty(SSWAPPredicate, String, URI) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the specified value and datatype URI.
setProperty(SSWAPPredicate, SSWAPLiteral) - Method in interface info.sswap.api.model.SSWAPIndividual
Sets the value of the property to the literal object.
setProvider(SSWAPProvider) - Method in interface info.sswap.api.model.SSWAPResource
Sets the provider for this resource.
setProvidesResource(Collection<SSWAPResource>) - Method in interface info.sswap.api.model.SSWAPProvider
Sets the information about all the resources provided by this provider.
setRIG(RIG) - Method in class info.sswap.api.servlet.MapsTo
The RIG for this mapping; this should be set at the first opportunity (e.g. in initializeRequest.
setServlet(SimpleSSWAPServlet) - Method in class info.sswap.api.servlet.MapsTo
 
setStatus(String, String) - Method in class info.sswap.api.servlet.RRGCache
 
setSubject(SSWAPSubject) - Method in interface info.sswap.api.model.SSWAPGraph
Sets the subject of the graph.
setSubjects(Collection<SSWAPSubject>) - Method in interface info.sswap.api.model.SSWAPGraph
Sets the subjects of the graph.
setSuggestedPollingInterval(String, int) - Method in class info.sswap.api.servlet.RRGCache
Sets suggested polling interval for a (potentially future) RRG identified by a token.
setTimeout(int) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Set servlet timeout value, in milliseconds.
setTimeToLive(long) - Method in interface info.sswap.api.model.Cache
Sets the time-to-live for entries in this cache; that is, the time after which an entry in this cache is considered stale, and will be retrieved again from its source.
setValueValidation(SSWAPDocument, boolean) - Method in interface info.sswap.api.spi.APIProvider
 
setValueValidation(SSWAPDocument, boolean) - Static method in class info.sswap.api.spi.ExtensionAPI
Turns on/off value validation performed when setting values of properties for SSWAPIndividual.
shutdown() - Method in class info.sswap.api.servlet.ContentCache
 
shutdown() - Method in class info.sswap.api.servlet.RRGCache
 
SimpleSSWAPServlet - Class in info.sswap.api.servlet
A servlet wrapper that works in concert with MapsTo for the mapping of subjects to objects.
SimpleSSWAPServlet() - Constructor for class info.sswap.api.servlet.SimpleSSWAPServlet
 
SSWAP - Class in info.sswap.api.model
Main factory for the creation of SSWAP objects (most elements in the API are just interfaces).
SSWAP() - Constructor for class info.sswap.api.model.SSWAP
 
SSWAPDatatype - Interface in info.sswap.api.model
Represents a datatype definition.
SSWAPDatatype.XSD - Interface in info.sswap.api.model
XSD URIs based on the Jena vocabulary.
SSWAPDocument - Interface in info.sswap.api.model
Represents a document in SSWAP that holds RDF content, such as may be hosted on the web (e.g., an RDG).
SSWAPElement - Interface in info.sswap.api.model
Represents a basic element in a SSWAPDocument.
SSWAPGraph - Interface in info.sswap.api.model
A SSWAP Graph of a SSWAP Resource.
SSWAPIndividual - Interface in info.sswap.api.model
Represents an individual in SSWAP, which corresponds to an RDF resource (a URI or blank node).
SSWAPList - Interface in info.sswap.api.model
A list of SSWAP elements.
SSWAPLiteral - Interface in info.sswap.api.model
Represents a literal value in SSWAP.
SSWAPModel - Interface in info.sswap.api.model
The most abstract interface in the SSWAP Java API.
SSWAPNode - Interface in info.sswap.api.model
SSWAPNodes are special individuals in SSWAP protocol, and they are handled specially.
SSWAPObject - Interface in info.sswap.api.model
Object of SSWAP Graph.
sswapObjects - Variable in class info.sswap.api.servlet.MapsTo
 
SSWAPPredicate - Interface in info.sswap.api.model
Represents an RDF predicate in SSWAP.
SSWAPProperty - Interface in info.sswap.api.model
A SSWAPProperty is a specific instance of a SSWAPPredicate with an assigned value, associated with a SSWAPIndividual.
SSWAPProtocol - Interface in info.sswap.api.model
Common interface for all protocol graphs (RDG, RIG, RRG, etc.).
SSWAPProvider - Interface in info.sswap.api.model
Describes a provider in SSWAP.
SSWAPResource - Interface in info.sswap.api.model
Describes a resource (a service) in SSWAP.
SSWAPServletContextListener - Class in info.sswap.api.servlet
Responds to events like initialization/destruction of the servlet context.
SSWAPServletContextListener() - Constructor for class info.sswap.api.servlet.SSWAPServletContextListener
 
SSWAPSubject - Interface in info.sswap.api.model
Subject of a SSWAP Graph.
SSWAPType - Interface in info.sswap.api.model
Represents a type of an individual in SSWAP.
start() - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Start the hotbox directory polling.
stop() - Method in interface info.sswap.ontologies.exec.api.HotboxPoller
Stop the hotbox directory polling.
store(String, byte[], String) - Method in class info.sswap.api.servlet.ContentCache
Stores a computed RRG, indicating that the computation of an RRG was successful, and allowing its future retrieval by the client.
store(String, RRG) - Method in class info.sswap.api.servlet.RRGCache
Stores a computed RRG, indicating that the computation of an RRG was successful, and allowing its future retrieval by the client.

A B C D E F G H I L M N O P Q R S T U V W X
Copyright (c) 2011, iPlant Collaborative, University of Arizona, Cold Spring Harbor Laboratories, University of Texas at Austin.