A B C D E F G H I J K L M N O P Q R S T U V W X

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MAKE_PDG_URI - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
MAKE_RDG_URI - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
MAKE_RIG_URI - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
MAKE_RQG_URI - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
MAKE_RRG_URI - Static variable in class info.sswap.impl.http.HTTPAPIImpl
 
makeAPI(URI, Class<T>, InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeDataStructure(Model) - Method in class info.sswap.impl.empire.model.RDFCSVWriter
Deprecated. The data structure for a RDF model is: a map of "rows", where the key to each row is a (unique) RDF subject; each subject points to a map of (unique) predicates; each predicate points to a list of (possibly non-unique) values
makeDataStructure(Model) - Method in class info.sswap.impl.empire.model.RDFTSVWriter
The data structure for a RDF model is: a map of "rows", where the key to each row is a (unique) RDF subject; each subject points to a map of (unique) predicates; each predicate points to a list of (possibly non-unique) values
makeKey(String, String, String) - Method in class info.sswap.impl.empire.model.RDFTSVWriter
 
makeParameterMap(HttpServletRequest) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Parse the HTTP servlet request into a "mutable" parameter:value map.
makePDG(InputStream) - Method in interface info.sswap.api.http.HTTPProvider
Make a Provider Description Graph (PDG) from a JSON (JavaScript Object Notation) specification.
makePDG(String) - Method in interface info.sswap.api.http.HTTPProvider
Convenience method to makePDG(InputStream) with input as single JSON string.
makePDG(InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makePDG(String) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRDG(InputStream) - Method in interface info.sswap.api.http.HTTPProvider
Make a Resource Description Graph (RDG) from a JSON (JavaScript Object Notation) specification.
makeRDG(String) - Method in interface info.sswap.api.http.HTTPProvider
Convenience method to makeRDG(InputStream) with input as single JSON string.
makeRDG(InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRDG(String) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRIG(InputStream) - Method in interface info.sswap.api.http.HTTPClient
Make a Response Invocation Graph (RIG) from a JSON (JavaScript Object Notation) specification.
makeRIG(String) - Method in interface info.sswap.api.http.HTTPClient
Convenience method to makeRIG(InputStream) with input as single JSON string.
makeRIG(InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRIG(String) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRQG(InputStream) - Method in interface info.sswap.api.http.HTTPClient
Make a Response Query Graph (RQG) from a JSON (JavaScript Object Notation) specification.
makeRQG(String) - Method in interface info.sswap.api.http.HTTPClient
Convenience method to makeRQG(InputStream) with input as single JSON string.
makeRQG(InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRQG(String) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRRG(InputStream) - Method in interface info.sswap.api.http.HTTPProvider
Make a Resource Response Graph (RRG) from a JSON (JavaScript Object Notation) specification.
makeRRG(String) - Method in interface info.sswap.api.http.HTTPProvider
Convenience method to makeRRG(InputStream) with input as single JSON string.
makeRRG(InputStream) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
makeRRG(String) - Method in class info.sswap.impl.http.HTTPAPIImpl
 
mapIndividuals(Collection<T>, Collection<T>, ProtocolImpl.MappingValidator<T>) - Method in class info.sswap.impl.empire.model.ProtocolImpl
Attempts to map individuals from this Protocol graph onto their corresponding individuals from RDG.
MappingPattern - Enum in info.sswap.api.model
An enumeration containing possible mappings between subjects and objects in a SSWAPGraph
MappingPattern() - Constructor for enum info.sswap.api.model.MappingPattern
 
mappingType - Variable in class info.sswap.impl.empire.model.ProtocolImpl.DefaultMappingValidator
 
MAPS_TO - Static variable in class info.sswap.impl.empire.Vocabulary
 
MapsTo - Class in info.sswap.api.servlet
A helper class that allows the mapping of subjects to objects without the complexities of servlet programming.
MapsTo() - Constructor for class info.sswap.api.servlet.MapsTo
 
mapsTo(SSWAPSubject) - Method in class info.sswap.api.servlet.MapsTo
Define this method to perform the mapping from the translated subject to its objects.
markedURIs - Variable in class info.sswap.impl.empire.io.ClosureBuilder
The set of URIs that were marked during closure computation.
matchingGraphs - Variable in class info.sswap.impl.empire.model.RIGImpl
 
MAX - Static variable in class info.sswap.api.input.io.JSONConstants
 
MAX_ARG_LENGTH - Static variable in class info.sswap.ontologies.exec.impl.ExecImpl
 
MAX_BLOCKS - Static variable in class info.sswap.ontologies.exec.impl.ExecImpl
 
MAX_CLOSURE_DEGREE_DEFAULT - Static variable in class info.sswap.api.model.Config
The default closure degree if not otherwise specified (must be a parseable integer)
MAX_CLOSURE_DEGREE_KEY - Static variable in class info.sswap.api.model.Config
Key for the property that defines how many closure degrees will be performed during closure computation.
MAX_HIERARCHY_CLOSURE_DEGREE_DEFAULT - Static variable in class info.sswap.api.model.Config
The default hierarchy retrieving closure degree if not otherwise specified (must be a parseable integer)
MAX_HIERARCHY_CLOSURE_DEGREE_KEY - Static variable in class info.sswap.api.model.Config
Key for the property that defines how many additional "hierarchy retrieving" closure degrees will be performed (in addition to the closure degrees defined by MAX_CLOSURE_DEGREE_KEY) during closure computation.
MAX_NUM_ARGS - Static variable in class info.sswap.ontologies.exec.impl.ExecImpl
 
MAX_OBJECTS_PARAM - Static variable in class info.sswap.api.servlet.LegacyServiceWrapperServlet
 
MAX_REDIRECTS - Static variable in class info.sswap.impl.empire.model.ModelUtils
A constant specifying how many redirects an invocation of a RIG/RQG should be allowed before giving up (e.g., because the redirects may be an infinite loop).
maxBytes - Variable in class info.sswap.impl.empire.io.ByteLimitInputStream
The byte limit
maxBytes - Variable in class info.sswap.impl.empire.io.ClosureBuilder
The maximum number of bytes transferred over the network this builder should not exceed while computing the closure Please note: the byte limits from separate threads are synchronized at the beginning and the end of each dereference operation.
maxBytes - Variable in class info.sswap.impl.empire.io.ClosureBuilderFactory
The byte limit for the generated closure builder.
maxCardinality - Variable in class info.sswap.api.input.impl.PropertyInputImpl
 
maxClosureBytes - Variable in class info.sswap.impl.empire.model.SourceModelImpl
A model-specific limit on the number of bytes during closure retrieval.
maxClosureThreads - Variable in class info.sswap.impl.empire.model.SourceModelImpl
A model-specific limit on number of threads during closure retrieval.
maxClosureTime - Variable in class info.sswap.impl.empire.model.SourceModelImpl
A model-specific limit on time (in ms) during closure retrieval.
maxObjects - Variable in class info.sswap.api.servlet.LegacyServiceWrapperServlet
 
maxPropertyInstances - Variable in class info.sswap.impl.empire.model.RDFCSVWriter.DataStructure
Deprecated.  
maxThreads - Variable in class info.sswap.impl.empire.io.ClosureBuilder
Maximum amount of concurrent threads (in addition to the caller's thread) for concurrent downloads.
maxThreads - Variable in class info.sswap.impl.empire.io.ClosureBuilderFactory
The number of concurrent threads used to compute the closure.
maxTime - Variable in class info.sswap.impl.empire.io.ClosureBuilder
The maximum amount of time this builder is allowed to spend while computing the closure.
maxTime - Variable in class info.sswap.impl.empire.io.ClosureBuilderFactory
The time limit for the generated closure builder.
message - Variable in class info.sswap.impl.empire.model.ExpressivityChecker.ProfileViolationDescriptionGenerator
 
METADATA - Static variable in class info.sswap.impl.empire.Vocabulary
Constant for sswap:metadata URI
mimeType - Variable in enum info.sswap.api.model.RDFRepresentation
 
MIN - Static variable in class info.sswap.api.input.io.JSONConstants
 
minCardinality - Variable in class info.sswap.api.input.impl.PropertyInputImpl
 
model - Variable in class info.sswap.api.input.io.JenaSerializer
 
model - Variable in class info.sswap.impl.empire.io.ClosureBuilder.DereferenceTask
The model retrieved (may be null, if no data could be retrieved)
model - Variable in class info.sswap.impl.empire.io.ModelCache.MemoryCacheEntry
 
model - Variable in class info.sswap.impl.empire.model.ReasoningServiceImpl.IndividualTranslator
The model where the translated concepts will be stored.
model - Variable in class info.sswap.impl.empire.model.SourceModelImpl
The actual Jena model
MODEL_CACHE - Static variable in class info.sswap.impl.empire.io.ClosureBuilderFactory
The default model cache shared by all builders, unless overridden for a specific builder.
MODEL_CACHE_ENTRY_TTL_DEFAULT - Static variable in class info.sswap.api.model.Config
The default TTL for a model cache entry, if not otherwise specified.
MODEL_CACHE_ENTRY_TTL_KEY - Static variable in class info.sswap.api.model.Config
Key for the property that defines how long an entry cached in model cache should be stored (time-to-live; TTL).
MODEL_CACHE_NEGATIVE_ENTRY_TTL_DEFAULT - Static variable in class info.sswap.api.model.Config
 
MODEL_CACHE_NEGATIVE_ENTRY_TTL_KEY - Static variable in class info.sswap.api.model.Config
 
modelCache - Variable in class info.sswap.impl.empire.io.ClosureBuilder
 
modelCache - Variable in class info.sswap.impl.empire.io.ClosureBuilderFactory
The model cache that will be used by the builder -- by default, MODEL_CACHE is used, unless overridden via setModelCache(ModelCache) method.
ModelCache - Class in info.sswap.impl.empire.io
A cache for Jena models.
ModelCache() - Constructor for class info.sswap.impl.empire.io.ModelCache
Creates an empty cache
ModelCache(long, long) - Constructor for class info.sswap.impl.empire.io.ModelCache
Creates an empty cache with a time-to-live TTL.
ModelCache(long, long, boolean) - Constructor for class info.sswap.impl.empire.io.ModelCache
 
ModelCache.MemoryCacheEntry - Class in info.sswap.impl.empire.io
 
ModelCache.MemoryCacheEntry(Model, boolean) - Constructor for class info.sswap.impl.empire.io.ModelCache.MemoryCacheEntry
 
modelContainsPattern(Model, Resource, Property, RDFNode) - Method in class info.sswap.impl.empire.io.ClosureBuilder
 
ModelImpl - Class in info.sswap.impl.empire.model
Implements SSWAPModel.
ModelImpl() - Constructor for class info.sswap.impl.empire.model.ModelImpl
Initializes this object.
ModelResolver - Interface in info.sswap.api.model
Resolves a source model/SSWAP protocol graph by extracting definitions for all externally defined types
ModelUtils - Class in info.sswap.impl.empire.model
Contains utilities to manipulate Jena models as they are read or written by this API.
ModelUtils() - Constructor for class info.sswap.impl.empire.model.ModelUtils
 
MODULE_EXTRACTION_ENABLED_DEFAULT - Static variable in class info.sswap.api.model.Config
The default URI for the module extraction service
MODULE_EXTRACTION_ENABLED_KEY - Static variable in class info.sswap.api.model.Config
The key for the URI of the module extraction service
MODULE_EXTRACTION_URI_DEFAULT - Static variable in class info.sswap.api.model.Config
The default URI for the module extraction service
MODULE_EXTRACTION_URI_KEY - Static variable in class info.sswap.api.model.Config
The key for the URI of the module extraction service
mResolver - Variable in class info.sswap.impl.empire.model.ReasoningServiceImpl
Used to resolve externally defined terms
mResolver - Variable in class info.sswap.impl.empire.model.SourceModelImpl
 
mutable - Variable in class info.sswap.impl.empire.model.RRGImpl
A flag indicating whether this RRG is mutable.

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Copyright (c) 2011, iPlant Collaborative, University of Arizona, Cold Spring Harbor Laboratories, University of Texas at Austin.