A B C D E F G H I J K L M N O P Q R S T U V W X

E

EHCACHE_CONF_FILE - Static variable in class info.sswap.api.servlet.ContentCache
Name of resource that contains EHCache configuration file
EHCACHE_CONF_FILE - Static variable in class info.sswap.api.servlet.RRGCache
Name of resource that contains EHCache configuration file
ElementImpl - Class in info.sswap.impl.empire.model
Implements a SSWAPElement (an element in SSWAP other than an RDF data source like a PDG or a canonical/protocol graph)
ElementImpl() - Constructor for class info.sswap.impl.empire.model.ElementImpl
 
EmpireGeneratedNodeImpl - Class in info.sswap.impl.empire.model
An abstract class containing methods common to all Empire-generated SSWAPIndividuals.
EmpireGeneratedNodeImpl() - Constructor for class info.sswap.impl.empire.model.EmpireGeneratedNodeImpl
 
encodedUsernameAndPassword - Variable in class info.sswap.ontologies.data.impl.HTTPBasicAuthenticationAccessor
 
enqueueHierarchyURIs(Model) - Method in class info.sswap.impl.empire.io.ClosureBuilder
 
enqueueURI(String) - Method in class info.sswap.impl.empire.io.ClosureBuilder
Add a URI to the dereference queue, unless the URI has been already processed (i.e., has either been dereferenced or is awaiting dereference).
enqueueURIs(Model) - Method in class info.sswap.impl.empire.io.ClosureBuilder
Add URIs of all resources to a dereference queue (unless they have already been processed).
ensureProperView(List<? extends ModelImpl>, Class<T>) - Method in class info.sswap.impl.empire.model.EmpireGeneratedNodeImpl
 
ensureProperView(ModelImpl, Class<T>) - Method in class info.sswap.impl.empire.model.EmpireGeneratedNodeImpl
 
ENTITY - Static variable in interface info.sswap.api.model.SSWAPDatatype.XSD
xsd:ENTITY
entityManager - Variable in class info.sswap.impl.empire.model.SourceModelImpl
The entity manager that creates Empire objects based on the information from the Jena model.
entityManagerFactory - Variable in class info.sswap.impl.empire.model.ImplFactory
The factory for creating Empire EntityManagers (one manager for each Jena model/data source).
entryTTL - Variable in class info.sswap.impl.empire.io.ModelCache
The time-to-live (TTL) for entries in ms.
EnumeratedInput - Interface in info.sswap.api.input
Represents an enumerated input where the allowed values should be chosen from a given set of values.
EnumeratedInputImpl - Class in info.sswap.api.input.impl
 
EnumeratedInputImpl(Collection<InputValue>) - Constructor for class info.sswap.api.input.impl.EnumeratedInputImpl
 
EOF - Static variable in class info.sswap.ontologies.exec.impl.ExecImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.AtomicInputImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.BNodeValueImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.EnumeratedInputImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.IntersectionInputImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.LiteralValueImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.PropertyInputImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.UnionInputImpl
 
equals(Object) - Method in class info.sswap.api.input.impl.URIValueImpl
 
equals(Object) - Method in class info.sswap.impl.empire.model.DatatypeImpl
 
equals(Object) - Method in class info.sswap.impl.empire.model.IndividualImpl
Overridden equals() method.
equals(Object) - Method in class info.sswap.impl.empire.model.Literal
 
equals(Object) - Method in class info.sswap.impl.empire.model.PredicateImpl
 
equals(Object) - Method in class info.sswap.impl.empire.model.PropertyImpl
 
equals(Object) - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl.ReasoningTaskBase.ClassIndividualMapping
Overridden equals() method.
equals(Object) - Method in class info.sswap.impl.empire.model.SourceModelImpl
 
equals(Object) - Method in class info.sswap.impl.empire.model.TypeImpl
 
error(Exception) - Method in class info.sswap.impl.empire.model.JenaModelFactory.ErrorHandler
Method used by Jena to report that an error occurred
errorMessage - Variable in class info.sswap.api.servlet.RRGCache.Entry
The error message (if there is one; it may be null)
errors - Variable in class info.sswap.impl.empire.model.JenaModelFactory.ErrorHandler
 
exception - Variable in class info.sswap.impl.http.AbstractHTTPResponse
 
Exec - Interface in info.sswap.ontologies.exec.api
Execution of legacy programs.
ExecException - Exception in info.sswap.ontologies.exec.api
Root class for all Exec-specific exceptions.
ExecException() - Constructor for exception info.sswap.ontologies.exec.api.ExecException
Creates a new exception
ExecException(String) - Constructor for exception info.sswap.ontologies.exec.api.ExecException
Creates a new exception with the specified message
ExecException(Throwable) - Constructor for exception info.sswap.ontologies.exec.api.ExecException
Creates a new exception with the specified underlying cause
ExecException(String, Throwable) - Constructor for exception info.sswap.ontologies.exec.api.ExecException
Creates a new exception with the specified message and the underlying cause
ExecImpl - Class in info.sswap.ontologies.exec.impl
Implementation for ExecServlet.
ExecImpl() - Constructor for class info.sswap.ontologies.exec.impl.ExecImpl
 
ExecServlet - Class in info.sswap.ontologies.exec.api
The Exec servlet allows the wrapping of legacy, non-semantic programs as semantic web services.
ExecServlet() - Constructor for class info.sswap.ontologies.exec.api.ExecServlet
 
executeQuery(Model...) - Method in interface info.sswap.api.model.RQG
Creates and executes a SPARQL query that determines which RDGs match this RQG.
executeQuery(Model...) - Method in class info.sswap.impl.empire.model.RQGImpl
 
executeRequest(URLConnection) - Static method in class info.sswap.impl.empire.model.ModelUtils
Executes the HTTP request associated with the given connection without any input.
executeRequest(URLConnection, InputStream) - Static method in class info.sswap.impl.empire.model.ModelUtils
Executes the HTTP request associated with the given connection with the given input which may be null.
executeRequest(URLConnection, InputStream, boolean) - Static method in class info.sswap.impl.empire.model.ModelUtils
Executes the HTTP request associated with the given connection with the given input which may be null.
EXECUTION_STATUS_HEADER - Static variable in class info.sswap.api.servlet.CacheHandler
 
executorService - Variable in class info.sswap.impl.empire.io.ClosureBuilder.DereferenceTask
The executor service that will execute this task
existsTyped(SourceModel, URI) - Method in class info.sswap.impl.empire.model.ImplFactory
 
EXPLANATION_SYNTAX - Static variable in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
Expressivity - Enum in info.sswap.api.model
Enumeration for different expressivities of the underlying RDF data.
Expressivity() - Constructor for enum info.sswap.api.model.Expressivity
 
expressivityChecker - Variable in class info.sswap.impl.empire.io.ClosureBuilder
 
ExpressivityChecker - Class in info.sswap.impl.empire.model
Checks whether an OWLOntology has a specified expressivity
ExpressivityChecker() - Constructor for class info.sswap.impl.empire.model.ExpressivityChecker
Creates a new expressivity checker
expressivityChecker - Variable in class info.sswap.impl.empire.model.SourceModelImpl
 
ExpressivityChecker.ProfileViolationDescriptionGenerator - Class in info.sswap.impl.empire.model
 
ExpressivityChecker.ProfileViolationDescriptionGenerator() - Constructor for class info.sswap.impl.empire.model.ExpressivityChecker.ProfileViolationDescriptionGenerator
 
ExtensionAPI - Class in info.sswap.api.spi
An API for extensions of the basic SSWAP API.
ExtensionAPI() - Constructor for class info.sswap.api.spi.ExtensionAPI
 
extractABox() - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
Extracts the ABox from the current OntModel
extractABox(Model) - Static method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
extractInferredIndividualModel(URI) - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
extractInferredModel() - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
extractOutputURI(SSWAPModel) - Method in class info.sswap.api.servlet.AbstractSSWAPServlet
Extracts sswap:outputURI from the sswap:Resource in this SSWAPModel.
extractTBox() - Method in class info.sswap.impl.empire.model.ReasoningServiceImpl
Extracts the TBox from the current OntModel
extractTBox(Model) - Static method in class info.sswap.impl.empire.model.ReasoningServiceImpl
 
extractTypeDefinition(Model, Resource) - Static method in class info.sswap.impl.empire.model.ReasoningServiceImpl
Extracts all the statements that make up an anonymous type.

A B C D E F G H I J K L M N O P Q R S T U V W X
Copyright (c) 2011, iPlant Collaborative, University of Arizona, Cold Spring Harbor Laboratories, University of Texas at Austin.